I had the same issue back in the day when I had that intake and apr stage 2 (only happened when it was cold out)
Dunno what eurodynes stage 2 is tuned for but aprs tune was developed for an oem style intake. It was throwin the maf readings way off.
See here's the thing that confuses me
The original owner was the one who had it tuned, and did many of the mods.
He then sold the car on to the person I got it from. Among the things I am told was done was a new HPFP. But the casing on mine is so obviously original. You can tell from the corrosion etc. Now whether he did the internals idk - I did the cam follower a month ago and stupidly I wasn't even thinking about comparing things to the various aftermarket setups out there. I will next time around
Eurodyne states "Our stage 2 reflash for 2.0TSI vehicles is designed to work with an upgraded Downpipe ,high flow converter and high pressure fuel pump upgrade.
Aftermarket intakes and exhaust systems are also compatible, but not required."
My car Is converter deprived, a downpipe that looks like APR, stock catback with resonator removed